GLAM Radiomics Documentation

Welcome to the official documentation for the Gray-Level Affinity Metrics (GLAM) framework.

Use the Table of Contents below or in the sidebar to navigate through the theoretical foundations, installation instructions, and API reference.

Introduction

• Home
  • Theoretical Foundation
  • GLAM Radiomics
  • Key Advantages
• Release Notes
  • GLAM 1.6.4 (Core Physics & Boundary Continuity Engine Update)
  • GLAM 1.6.2 (Global Intensity Anchoring & Mapping Stabilization)
  • GLAM 1.5.2 (New Features & Matrices)
  • GLAM 1.5.0 (Core Engine Update)
  • GLAM 1.4.9 (Adding Granulometry and Percolation Metrics)
  • GLAM 1.4.6 (Feature Update)
  • GLAM 1.3.2 (Update)
  • GLAM 1.2.8 (Major Update)
  • GLAM 1.0.8 (Public Release)

Theory & Background

• Original Radiomics Classes
  • Gray-Level Co-occurrence Matrix (GLCM)
  • Gray-Level Run Length Matrix (GLRLM)
  • Gray-Level Size Zone Matrix (GLSZM)
  • Gray-Level Dependence Matrix (GLDM)
  • Neighborhood Gray-Tone Difference Matrix (NGTDM)
  • Log10 Transformation and Normalization
  • Dynamic Matrix Trimming in GLAM
• Statistical Mechanics and Thermodynamics
  • Radial Distribution Function (RDF)
  • Key Thermodynamic Metrics
  • Mechanical Phase and Jamming Transitions
  • Note on the Removal of JS Divergence (Asymmetry)
• Geometric Classes
  • Structural and Directional Organization
  • Inverse Correlation Length (Decay Rate, \(\kappa\))
  • Complexity and Topology
  • Discrete Morphology
  • Topological Excess Features (Excess Matrices)

User Guide

• Installation
  • Prerequisites
  • Installing from TestPyPI
  • GPU Acceleration (Optional but Highly Recommended)
  • Key Dependencies
  • Verifying the Installation
• Usage Guide
  • Configuration (config.ini)
  • Habitat Radiomics (Multi-Region Analysis)
  • Image Quantization Methods
  • Basic Extraction Script
  • Batch Processing Multiple Scans
  • Tuning the Local Shell Radius
  • Output Files
• GLAM Feature Dictionary
  • Native Standard Radiomics Classes
  • Statistical Mechanics & Thermodynamic Classes
  • Soft Matter & Geometric Classes
  • Percolation Theory & Network Connectivity
  • Mechanical Phase & Jamming Transitions
  • Matrix Reduction Features
  • Integration with config.ini

API Reference

• glam_radiomics
  • glam_radiomics package

Indices and tables

• Index

• Module Index

• Search Page